>>VueScan does a very nice job. Perhaps a stitched file could be created that VueScan would consider a "raw" file, and then process as if it had been created by the scanner.<<
I haven't tried it yet but this seems possible with Vuescan. I just checked and it has a "Source: File" option and the little tool tip that comes up says you can use TIFF, jpg, or RAW files.
On a related note, I went to upgrade/buy the new version of Vuescan the other day--mine was very old--and it turns out that Hamrick is giving a free upgrade to *all* prior owners to the new version. Very cool, very nice. There's even a serial number look-up capability on the web site if you've lost yours.
http://www.hamrick.com/#anniversary
--Darin
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