Here are some images of my tests with my Linhof MT3000 and my Cooke 229mm Portrait lens. Thank you to everyone who tried to help me figure out what was wrong. I thought I would include the LensAlign test plus a shot of a friend.
With the friend. I had him hold up a rigid plastic card with very defined text next to his eye. I had another friend standing beside him, making sure the plastic card was in the same plane as the front of the model's eye.
For the LensAlign tests, I cropped the images and put them through a high pass filter in Photoshop, in order to see the numbers more accurately.
I scanned all of the film (Kodak E100G) at the highest resolution on a Hasselblad X5 scanner.
Here is the LensAlign test from a distance of 54 inches:
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